#!/usr/bin/env python3
"""test of a cell-centered, centered-difference approximate projection.
initialize the velocity field to be divergence free and then add to it
the gradient of a scalar (whose normal component vanishes on the
boundaries). The projection should recover the original divergence-
free velocity field.
The test velocity field comes from Almgen, Bell, and Szymczak 1996.
This makes use of the multigrid solver with periodic boundary conditions.
One of the things that this test demonstrates is that the initial
projection may not be able to completely remove the divergence free
part, so subsequent projections may be necessary. In this example, we
add a very strong gradient component.
The total number of projections to perform is given by nproj. Each
projection uses the divergence of the velocity field from the previous
iteration as its source term.
Note: the output file created stores the original field, the polluted
field, and the recovered field.
"""
import numpy as np
import pyro.mesh.boundary as bnd
from pyro.mesh import patch
from pyro.multigrid import MG
[docs]
def doit(nx, ny):
"""manage the entire projection"""
nproj = 2
# create a mesh containing the x- and y-velocities, and periodic boundary
# conditions
myg = patch.Grid2d(nx, ny, ng=1)
bc = bnd.BC(xlb="periodic", xrb="periodic",
ylb="periodic", yrb="periodic")
U = patch.CellCenterData2d(myg)
U.register_var('u-old', bc)
U.register_var('v-old', bc)
U.register_var('u+gphi', bc)
U.register_var('v+gphi', bc)
U.register_var('u', bc)
U.register_var('v', bc)
U.register_var('divU', bc)
U.register_var('phi-old', bc)
U.register_var('phi', bc)
U.register_var('dphi', bc)
U.register_var('gradphi_x-old', bc)
U.register_var('gradphi_y-old', bc)
U.register_var('gradphi_x', bc)
U.register_var('gradphi_y', bc)
U.create()
# initialize a divergence free velocity field,
# u = -sin^2(pi x) sin(2 pi y), v = sin^2(pi y) sin(2 pi x)
u = U.get_var('u')
v = U.get_var('v')
u[:, :] = -(np.sin(np.pi*myg.x2d)**2)*np.sin(2.0*np.pi*myg.y2d)
v[:, :] = (np.sin(np.pi*myg.y2d)**2)*np.sin(2.0*np.pi*myg.x2d)
# store the original, divergence free velocity field for comparison later
uold = U.get_var('u-old')
vold = U.get_var('v-old')
uold[:, :] = u.copy()
vold[:, :] = v.copy()
# the projection routine should decompose U into a divergence free
# part, U_d, plus the gradient of a scalar. Add on the gradient
# of a scalar that satisfies gradphi.n = 0. After the projection,
# we should recover the divergence free field above. Take phi to
# be a gaussian, exp(-((x-x0)^2 + (y-y0)^2)/R)
R = 0.1
x0 = 0.5
y0 = 0.5
phi = U.get_var('phi-old')
gradphi_x = U.get_var('gradphi_x-old')
gradphi_y = U.get_var('gradphi_y-old')
phi[:, :] = np.exp(-((myg.x2d-x0)**2 + (myg.y2d-y0)**2)/R**2)
gradphi_x[:, :] = phi*(-2.0*(myg.x2d-x0)/R**2)
gradphi_y[:, :] = phi*(-2.0*(myg.y2d-y0)/R**2)
u += gradphi_x
v += gradphi_y
u_plus_gradphi = U.get_var('u+gphi')
v_plus_gradphi = U.get_var('v+gphi')
u_plus_gradphi[:, :] = u[:, :]
v_plus_gradphi[:, :] = v[:, :]
# use the mesh class to enforce the periodic BCs on the velocity field
U.fill_BC_all()
# now compute the cell-centered, centered-difference divergence
divU = U.get_var('divU')
divU[myg.ilo:myg.ihi+1, myg.jlo:myg.jhi+1] = \
0.5*(u[myg.ilo+1:myg.ihi+2, myg.jlo:myg.jhi+1] -
u[myg.ilo-1:myg.ihi, myg.jlo:myg.jhi+1])/myg.dx + \
0.5*(v[myg.ilo:myg.ihi+1, myg.jlo+1:myg.jhi+2] -
v[myg.ilo:myg.ihi+1, myg.jlo-1:myg.jhi])/myg.dy
# create the multigrid object with Neumann BCs
a = MG.CellCenterMG2d(nx, ny,
xl_BC_type="periodic", xr_BC_type="periodic",
yl_BC_type="periodic", yr_BC_type="periodic",
verbose=1)
# --------------------------------------------------------------------------
# projections
# --------------------------------------------------------------------------
for iproj in range(nproj):
a.init_zeros()
a.init_RHS(divU)
a.solve(rtol=1.e-12)
phi = U.get_var('phi')
solution = a.get_solution()
phi[myg.ilo-1:myg.ihi+2, myg.jlo-1:myg.jhi+2] = \
solution[a.ilo-1:a.ihi+2, a.jlo-1:a.jhi+2]
dphi = U.get_var('dphi')
dphi[:, :] = phi - U.get_var('phi-old')
# compute the gradient of phi using centered differences
gradphi_x = U.get_var('gradphi_x')
gradphi_y = U.get_var('gradphi_y')
gradphi_x[myg.ilo:myg.ihi+1, myg.jlo:myg.jhi+1] = \
0.5*(phi[myg.ilo+1:myg.ihi+2, myg.jlo:myg.jhi+1] -
phi[myg.ilo-1:myg.ihi, myg.jlo:myg.jhi+1])/myg.dx
gradphi_y[myg.ilo:myg.ihi+1, myg.jlo:myg.jhi+1] = \
0.5*(phi[myg.ilo:myg.ihi+1, myg.jlo+1:myg.jhi+2] -
phi[myg.ilo:myg.ihi+1, myg.jlo-1:myg.jhi])/myg.dy
# update the velocity field
u -= gradphi_x
v -= gradphi_y
U.fill_BC_all()
# recompute the divergence diagnostic
divU[myg.ilo:myg.ihi+1, myg.jlo:myg.jhi+1] = \
0.5*(u[myg.ilo+1:myg.ihi+2, myg.jlo:myg.jhi+1] -
u[myg.ilo-1:myg.ihi, myg.jlo:myg.jhi+1])/myg.dx + \
0.5*(v[myg.ilo:myg.ihi+1, myg.jlo+1:myg.jhi+2] -
v[myg.ilo:myg.ihi+1, myg.jlo-1:myg.jhi])/myg.dy
U.write("proj-periodic.after"+("%d" % iproj))
if __name__ == "__main__":
doit(128, 128)
