import importlib
import matplotlib
import matplotlib.pyplot as plt
import numpy as np
import pyro.advection_nonuniform.advective_fluxes as flx
from pyro.mesh import patch
from pyro.particles import particles
from pyro.simulation_null import NullSimulation, bc_setup, grid_setup
from pyro.util import plot_tools
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class Simulation(NullSimulation):
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def initialize(self):
"""
Initialize the grid and variables for advection and set the initial
conditions for the chosen problem.
"""
def shift(velocity):
"""
Computes the direction of shift for each node for upwind
discretization based on sign of veclocity
"""
shift_vel = np.sign(velocity)
shift_vel[np.where(shift_vel <= 0)] = 0
shift_vel[np.where(shift_vel > 0)] = -1
return shift_vel
my_grid = grid_setup(self.rp, ng=4)
# create the variables
bc, bc_xodd, bc_yodd = bc_setup(self.rp)
my_data = patch.CellCenterData2d(my_grid)
# velocities
my_data.register_var("x-velocity", bc_xodd)
my_data.register_var("y-velocity", bc_yodd)
# shift
my_data.register_var("x-shift", bc_xodd)
my_data.register_var("y-shift", bc_yodd)
# density
my_data.register_var("density", bc)
my_data.create()
self.cc_data = my_data
if self.rp.get_param("particles.do_particles") == 1:
n_particles = self.rp.get_param("particles.n_particles")
particle_generator = self.rp.get_param("particles.particle_generator")
self.particles = particles.Particles(self.cc_data, bc, n_particles, particle_generator)
# now set the initial conditions for the problem
problem = importlib.import_module(f"pyro.advection_nonuniform.problems.{self.problem_name}")
problem.init_data(self.cc_data, self.rp)
# compute the required shift for each node using corresponding velocity at the node
shx = self.cc_data.get_var("x-shift")
shx[:, :] = shift(self.cc_data.get_var("x-velocity"))
shy = self.cc_data.get_var("y-shift")
shy[:, :] = shift(self.cc_data.get_var("y-velocity"))
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def method_compute_timestep(self):
"""
The timestep() function computes the advective timestep
(CFL) constraint. The CFL constraint says that information
cannot propagate further than one zone per timestep.
We use the driver.cfl parameter to control what fraction of the CFL
step we actually take.
"""
cfl = self.rp.get_param("driver.cfl")
u = self.cc_data.get_var("x-velocity")
v = self.cc_data.get_var("y-velocity")
# the timestep is min(dx/|u|, dy|v|)
xtmp = self.cc_data.grid.dx/np.amax(np.fabs(u))
ytmp = self.cc_data.grid.dy/np.amax(np.fabs(v))
self.dt = cfl*float(min(xtmp, ytmp))
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def evolve(self):
"""
Evolve the linear advection equation through one timestep. We only
consider the "density" variable in the CellCenterData2d object that
is part of the Simulation.
"""
myd = self.cc_data
dtdx = self.dt/myd.grid.dx
dtdy = self.dt/myd.grid.dy
flux_x, flux_y = flx.unsplit_fluxes(myd, self.rp, self.dt, "density")
"""
do the differencing for the fluxes now. Here, we use slices so we
avoid slow loops in python. This is equivalent to:
myPatch.data[i,j] = myPatch.data[i,j] + \
dtdx*(flux_x[i,j] - flux_x[i+1,j]) + \
dtdy*(flux_y[i,j] - flux_y[i,j+1])
"""
dens = myd.get_var("density")
dens.v()[:, :] = dens.v() + dtdx*(flux_x.v() - flux_x.ip(1)) + \
dtdy*(flux_y.v() - flux_y.jp(1))
if self.particles is not None:
u = myd.get_var("x-velocity")
v = myd.get_var("y-velocity")
self.particles.update_particles(self.dt, u, v)
# increment the time
myd.t += self.dt
self.n += 1
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def dovis(self):
"""
Do runtime visualization.
"""
plt.clf()
dens = self.cc_data.get_var("density")
myg = self.cc_data.grid
_, axes, _ = plot_tools.setup_axes(myg, 1)
# plot density
ax = axes[0]
img = ax.imshow(np.transpose(dens.v()),
interpolation="nearest", origin="lower",
extent=[myg.xmin, myg.xmax, myg.ymin, myg.ymax],
cmap=self.cm)
ax.set_xlabel("x")
ax.set_ylabel("y")
# needed for PDF rendering
cb = axes.cbar_axes[0].colorbar(img)
cb.formatter = matplotlib.ticker.FormatStrFormatter("")
cb.solids.set_rasterized(True)
cb.solids.set_edgecolor("face")
plt.title("density")
if self.particles is not None:
particle_positions = self.particles.get_positions()
# dye particles
colors = self.particles.get_init_positions()[:, 0]
# plot particles
ax.scatter(particle_positions[:, 0],
particle_positions[:, 1], c=colors, cmap="Greys")
ax.set_xlim([myg.xmin, myg.xmax])
ax.set_ylim([myg.ymin, myg.ymax])
plt.figtext(0.05, 0.0125, f"t = {self.cc_data.t:10.5f}")
plt.pause(0.001)
plt.draw()