Source code for pyro.compressible_sr.simulation

import importlib

import matplotlib.pyplot as plt
import numpy as np

import pyro.compressible_sr.unsplit_fluxes as flx
import pyro.mesh.boundary as bnd
from pyro.compressible_sr import BC, derives, eos
from pyro.simulation_null import NullSimulation, bc_setup, grid_setup
from pyro.util import plot_tools

# np.seterr(all='raise')


[docs] class Variables: """ a container class for easy access to the different compressible variable by an integer key """ def __init__(self, myd): self.nvar = len(myd.names) # conserved variables -- we set these when we initialize for # they match the CellCenterData2d object try: self.idens = myd.names.index("density") self.ixmom = myd.names.index("x-momentum") self.iymom = myd.names.index("y-momentum") self.iener = myd.names.index("energy") except ValueError: self.idens = 0 self.ixmom = 1 self.iymom = 2 self.iener = 3 # if there are any additional variable, we treat them as # passively advected scalars self.naux = self.nvar - 4 if self.naux > 0: self.irhox = 4 else: self.irhox = -1 # primitive variables self.nq = 4 + self.naux self.irho = 0 self.iu = 1 self.iv = 2 self.ip = 3 if self.naux > 0: self.ix = 4 # advected scalar else: self.ix = -1
[docs] def prim_to_cons(q, gamma, ivars, myg): """ convert an input vector of primitive variables to conserved variables """ U = myg.scratch_array(nvar=ivars.nvar) u = q[:, :, ivars.iu] v = q[:, :, ivars.iv] try: W = 1 / np.sqrt(1 - u**2 - v**2) except FloatingPointError: u[np.isnan(u)] = 0 v[np.isnan(v)] = 0 W = np.ones_like(u) rhoh = eos.rhoh_from_rho_p(gamma, q[:, :, ivars.irho], q[:, :, ivars.ip]) U[:, :, ivars.idens] = q[:, :, ivars.irho] * W U[:, :, ivars.ixmom] = u * rhoh * W**2 U[:, :, ivars.iymom] = v * rhoh * W**2 U[:, :, ivars.iener] = rhoh * W**2 - q[:, :, ivars.ip] - U[:, :, ivars.idens] if ivars.naux > 0: for nq, nu in zip(range(ivars.ix, ivars.ix+ivars.naux), range(ivars.irhox, ivars.irhox+ivars.naux)): U[:, :, nu] = q[:, :, nq]*q[:, :, ivars.irho]*W return U
[docs] class Simulation(NullSimulation): """The main simulation class for the corner transport upwind compressible hydrodynamics solver """
[docs] def initialize(self, extra_vars=None, ng=4): """ Initialize the grid and variables for compressible flow and set the initial conditions for the chosen problem. """ my_grid = grid_setup(self.rp, ng=ng) my_data = self.data_class(my_grid) # define solver specific boundary condition routines bnd.define_bc("hse", BC.user, is_solid=False) bnd.define_bc("ramp", BC.user, is_solid=False) # for double mach reflection problem bc, bc_xodd, bc_yodd = bc_setup(self.rp) # are we dealing with solid boundaries? we'll use these for # the Riemann solver self.solid = bnd.bc_is_solid(bc) # density and energy my_data.register_var("density", bc) my_data.register_var("energy", bc) my_data.register_var("x-momentum", bc_xodd) my_data.register_var("y-momentum", bc_yodd) # any extras? if extra_vars is not None: for v in extra_vars: my_data.register_var(v, bc) # store the EOS gamma as an auxiliary quantity so we can have a # self-contained object stored in output files to make plots. # store grav because we'll need that in some BCs my_data.set_aux("gamma", self.rp.get_param("eos.gamma")) my_data.set_aux("grav", self.rp.get_param("compressible.grav")) my_data.create() self.cc_data = my_data # some auxiliary data that we'll need to fill GC in, but isn't # really part of the main solution aux_data = self.data_class(my_grid) aux_data.register_var("ymom_src", bc_yodd) aux_data.register_var("E_src", bc) aux_data.create() self.aux_data = aux_data # derived variables self.cc_data.add_derived(derives.derive_primitives) self.ivars = Variables(my_data) self.cc_data.add_ivars(self.ivars) # initial conditions for the problem problem = importlib.import_module("pyro.{}.problems.{}".format( self.solver_name, self.problem_name)) problem.init_data(self.cc_data, self.rp) if self.verbose > 0: print(my_data)
[docs] def method_compute_timestep(self): """ The timestep function computes the advective timestep (CFL) constraint. The CFL constraint says that information cannot propagate further than one zone per timestep. We use the driver.cfl parameter to control what fraction of the CFL step we actually take. """ cfl = self.rp.get_param("driver.cfl") # get the variables we need u, v, cs = self.cc_data.get_var(["velocity", "soundspeed"]) # print(f'u = {u}') # print(f'v = {v}') # print(f'cs = {cs}') # print(sum(abs(u))) # the timestep is min(dx/(|u| + cs), dy/(|v| + cs)) xtmp = self.cc_data.grid.dx/(abs(u) + cs) ytmp = self.cc_data.grid.dy/(abs(v) + cs) self.dt = cfl*float(min(xtmp.min(), ytmp.min()))
[docs] def evolve(self): """ Evolve the equations of compressible hydrodynamics through a timestep dt. """ tm_evolve = self.tc.timer("evolve") tm_evolve.begin() dens = self.cc_data.get_var("density") ymom = self.cc_data.get_var("y-momentum") ener = self.cc_data.get_var("energy") grav = self.rp.get_param("compressible.grav") myg = self.cc_data.grid Flux_x, Flux_y = flx.unsplit_fluxes(self.cc_data, self.aux_data, self.rp, self.ivars, self.solid, self.tc, self.dt) old_dens = dens.copy() old_ymom = ymom.copy() # conservative update dtdx = self.dt/myg.dx dtdy = self.dt/myg.dy for n in range(self.ivars.nvar): var = self.cc_data.get_var_by_index(n) var.v()[:, :] += \ dtdx*(Flux_x.v(n=n) - Flux_x.ip(1, n=n)) + \ dtdy*(Flux_y.v(n=n) - Flux_y.jp(1, n=n)) # gravitational source terms ymom[:, :] += 0.5*self.dt*(dens[:, :] + old_dens[:, :])*grav ener[:, :] += 0.5*self.dt*(ymom[:, :] + old_ymom[:, :])*grav # increment the time self.cc_data.t += self.dt self.n += 1 tm_evolve.end()
[docs] def dovis(self): """ Do runtime visualization. """ plt.clf() plt.rc("font", size=10) # we do this even though ivars is in self, so this works when # we are plotting from a file ivars = Variables(self.cc_data) # access gamma from the cc_data object so we can use dovis # outside of a running simulation. gamma = self.cc_data.get_aux("gamma") myg = self.cc_data.grid q = flx.cons_to_prim_wrapper(self.cc_data.data, gamma, ivars, myg) rho = q[:, :, ivars.irho] u = q[:, :, ivars.iu] v = q[:, :, ivars.iv] p = q[:, :, ivars.ip] try: e = eos.rhoe(gamma, p)/rho except FloatingPointError: p[:, :] = self.cc_data.data[:, :, ivars.iener] * (gamma-1) e = self.cc_data.data[:, :, ivars.iener] # p / (gamma - 1) magvel = np.sqrt(u**2 + v**2) fields = [rho, magvel, p, e] field_names = [r"$\rho$", r"$|U|$", "$p$", "$e$"] _, axes, cbar_title = plot_tools.setup_axes(myg, len(fields)) for n, ax in enumerate(axes): v = fields[n] img = ax.imshow(np.transpose(v.v()), interpolation="nearest", origin="lower", extent=[myg.xmin, myg.xmax, myg.ymin, myg.ymax], cmap=self.cm) ax.set_xlabel("x") ax.set_ylabel("y") # needed for PDF rendering cb = axes.cbar_axes[n].colorbar(img) cb.solids.set_rasterized(True) cb.solids.set_edgecolor("face") if cbar_title: cb.ax.set_title(field_names[n]) else: ax.set_title(field_names[n]) plt.figtext(0.05, 0.0125, f"t = {self.cc_data.t:10.5g}") plt.pause(0.001) plt.draw()
[docs] def write_extras(self, f): """ Output simulation-specific data to the h5py file f """ # make note of the custom BC gb = f.create_group("BC") # the value here is the value of "is_solid" gb.create_dataset("hse", data=False)